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Publications 2024

  • Bientz V, Lanois A, Ginibre N, Pagès S, Ogier JC, George S, Rialle S, Brillard J. (2024) OxyR is required for oxidative stress resistance of the entomopathogenic bacterium Xenorhabdus nematophila and has a minor role during the bacterial interaction with its hosts. Microbiology 10.1099/mic.0.001481

  • Dossa Komivi, Morel Angélique, Houngbo Mahugnon Ezekiel, Zotta Mota Ana, Maledon Erick, Irep Jean-Luc, Diman Jean-Louis, Mournet Pierre, Causse Sandrine, Nguyen Van Kien, Cornet Denis, Chaïr Hâna (2024) Genome-wide association studies reveal novel loci controlling tuber flesh color and oxidative browning in Dioscorea alata. Journal of the Science of Food and Agriculture 10.1002/jsfa.12721

  • Sardos Julie, Cenci Alberto, Martin Guillaume, Breton Catherine, Guignon Valentin, Van Den Houwe Ines, Mendez Yaleidis, Sachter-Smith Gabriel, Chase Rachel, Ruas Max, Rivallan Ronan, Paofa Janet, Wigmore William J., Hunter David Tilafono, D'Hont Angélique, Yahiaoui Nabila, Jenny Christophe, Perrier Xavier, Roux Nicolas, Rouard Mathieu (2024) Painting the diversity of a world's favorite fruit: A next generation catalog of cultivated bananas Plants, People, Planet 10.1002/ppp3.10581

  • Kifouli Adéoti, Kolawolé Valère Salako, Ulysse Ayihaou Daa‑Kpodé, Amadé Ouédraogo, Sylvain Santoni, Frederique Aberlenc, Mariano Joly Kpatènon, Muriel Latreille, Christine Tollon‑Cordet, Kodjo Djidjolé Etsè, Oumar Hissein Abba Mahmoud, Adama Faye, Estelle Jaligot, Thierry Beulé (024) Efficiency of simple sequence repeat (SSR) markers in genetic diversity study and differentiation of Borassus aethiopum Mart. and Borassus akeassii Bayton, Ouédr. & Guinko Genet Resour Crop Evol 10.1007/s10722-024-02067-3

  • Lebot Vincent, Labouisse Jean-Pierre, Rivallan Ronan, Kaoh Juliane, Davrieux Fabrice (2024) Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific. Food Control 10.1016/j.foodcont.2024.110598

  • Ismawanto Sigit, Aji Martini, Lopez David, Mournet Pierre, Gohet Eric, Syafaah Afdholiatus, Bonal Florelle, Oktavia Fetrina, Taryono, Subandiyah Siti, Montoro Pascal (2024) Genetic analysis of agronomic and physiological traits associated with latex yield revealed complex genetic bases in Hevea brasiliensis. Heliyon 10.1016/j.heliyon.2024.e33421

  • Shapeti A, Barrasa-Fano J, Abdel Fattah AR, de Jong J, Sanz-Herrera JA, Pezet M, Assou S, de Vet E, Elahi SA, Ranga A, Faurobert E, Van Oosterwyck H. (2024) Force-mediated recruitment and reprogramming of healthy endothelial cells drive vascular lesion growth Nature Communication 10.1038/s41467-024-52866-6

  • Chloé Viotti, Michel Chalot, Peter G. Kennedy, François Maillard, Sylvain Santoni, Damien Blaudez & Coralie Bertheau (2024) Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues Mycology 10.1080/21501203.2023.2301003

  • Concetta Burgarella, Marie-Fleur Brémaud, Gesa Von Hirschheydt, Veronique Viader, Morgane Ardisson, Sylvain Santoni, Vincent Ranwez, Miguel de Navascués, Jacques David, Sylvain Glémin (2024) Mating systems and recombination landscape strongly shape genetic diversity and selection in wheat relatives Evolution Letters 10.1093/evlett/qrae039

  • Laila Aqbouch, Omar Abou-Saaid, Gautier Sarah, Lison Zunino, Vincent Segura, Pierre Mournet, Florelle Bonal, Hayat Zaher, Ahmed El Bakkali, Philippe Cubry, Evelyne Costes, Bouchaib Khadari (2024) Genome-wide association analysis of flowering date in a collection of cultivated olive tree Horticulture Research 10.1093/hr/uhae265

  • Rio Simon, Toniutti Lucile, Salmon Frédéric, Hervouet Catherine, Cardi Céline, Mournet Pierre, Guiougou Chantal, Marius Franck, Mina Claude, Delos Jean-Marie Eric, Lambert Frédéric, Madec Camille, Efile Jean-Claude, Cruaud Corinne, Aury Jean-Marc, D'Hont Angélique, Hoarau Jean-Yves, Martin Guillaume (2024) Genome-wide association for agro-morphological traits in a triploid banana population with large chromosome rearrangements. Horticulture Research 10.1093/hr/uhae307

  • Janati-Idrissi S., de Abreu MR., Guyomar C., de Mello F., Nguyen T., Mechkouri N., Gay S., Montfort J., Gonzalez AA., Abbasi M., Bugeon J., Thermes V., Seitz H., Bobe J. (2024) Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production Nucleic Acids Research 10.1093/nar/gkad1154

  • Zotta Mota Ana, Dossa Komivi, Lechaudel Mathieu, Cornet Denis, Mournet Pierre, Santoni Sylvain, Lopez David, Chaïr Hâna (2024) Whole-genome sequencing and comparative genomics reveal candidate genes associated with quality traits in Dioscorea alata. BMC Genomics 10.1186/s12864-024-10135-2

  • Zunino Lison, Cubry Philippe, Sarah Gautier, Mournet Pierre, El Bakkali Ahmed, Aqbouch Laila, Sidibé-Bocs Stéphanie, Costes Evelyne, Khadari Bouchaib (2024) Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin PloS One 10.1371/journal.pone.0295043

  • Jenny C., Sachter-Smith G., Breton C., Rivallan R., Jacquemoud-Collet JP., Dubois C., Chabannes M., Lý NS., Haevermans T., Triệu TD., Insisiengmay O., Zhang T., Caruana ML., Sardos J., Perrier X. (2024) Musa species in mainland Southeast Asia: From wild to domesticate. PloS One 10.1371/journal.pone.0307592

  • Watson Amy E., Guitton Baptiste, Soriano Alexandre, Rivallan Ronan, Vignes Hélène, Farrera Isabelle, Huettel Bruno, Arnaiz Catalina, da Silveira Falavigna Vítor, Coupel-Ledru Aude, Segura Vincent, Sarah Gautier, Dufayard Jean François, Sidibe-Bocs Stéphanie, Costes Evelyne, Andres Fernando (2024) Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Frontiers in Plant Science 10.3389/fpls.2024.1352757

  • Patrick Ollitrault, Barbara HUFNAGEL, Franck Curk, Aude Perdereau, Pierre Mournet, Maëva Miranda, Gilles Costantino, Yann Froelicher, Mônica Alves, Maria Angeles Forner-Giner, Malcom W Smith, Pablo Aleza, Francois Leon Luro, Nelson Arno Wulff, Leandro Peña, Raphael Morillon, Arnaud Lemainque (2024) Comparative genetic mapping and a consensus interspecific genetic map reveals strong synteny and collinearity within the Citrus genus Frontiers in Plant Science 10.3389/fpls.2024.1475965

  • Carreel Françoise, Martin Guillaume, Ravel Sébastien, Roussel Véronique, Pagès Christine, Habas Rémy, Cantagrel Théo, Guiougou Chantal, Delos Jean-Marie Eric, Hervouet Catherine, Mournet Pierre, D'Hont Angélique, Yahiaoui Nabila, Salmon Frédéric (2024) Identification of Resistance QTLs to Black Leaf Streak Disease (Due to Pseudocercospora fijiensis) in Diploid Bananas (Musa acuminata) Horticulturae 10.3390/horticulturae10060608

  • Houdelet C, Blondeau-Bidet E, Mialhe X, Lallement S, Devilliers S, Falguière JC, Geffroy B. (2024) Plasma cortisol and production of miRNAs in red drum (Sciaenops ocellatus) exposed to three distinct challenges Fish Physiol Biochem. 10.1007/s10695-024-01304-x

  • Huth A, Ayoub I, Barateau L, Gerdes LA, Severac D, Krebs S, Blum H, Tumani H, Haas J, Wildemann B, Kümpfel T, Beltrán E, Liblau RS, Dauvilliers Y, Dornmair K. (2024) Single cell transcriptomics of cerebrospinal fluid cells from patients with recent-onset narcolepsy. J Autoimmun. 10.1016/j.jaut.2024.103234

  • Mazurais D, Simon V, Auffret P, Cormier A, Dauvé A, Madec L, Tanguy-Guillo B, Gayet N, Fleury E, Le Luyer J. (2024) Mutligenerational chronic exposure to near future ocean acidification in European sea bass (Dicentrarchus labrax): Insights into the regulation of the transcriptome in a sensory organ involved in feed intake, the tongue. Mar Environ Res. 10.1016/j.marenvres.2024.106775

  • Dardente H, Lomet D, Robert V, Lasserre O, Gonzalez AA, Mialhe X, Beltramo M. (2024) Photoperiod, but not progesterone, has a strong impact upon the transcriptome of the medio-basal hypothalamus in female goats and ewes. Mol Cell Endocrinol. 10.1016/j.mce.2024.112216

  • Blondeau-Bidet E, Tine M, Gonzalez AA, Guinand B, Lorin-Nebel C. (2024) Coping with salinity extremes: Gill transcriptome profiling in the black-chinned tilapia (Sarotherodon melanotheron). Sci Total Environ. 10.1016/j.scitotenv.2024.172620

  • Salles J, Eddiry S, Amri S, Galindo M, Lacassagne E, George S, Mialhe X, Lhuillier É, Franchitto N, Jeanneteau F, Gennero I, Salles JP, Tauber M. (2024) Differential DNA methylation in iPSC-derived dopaminergic neurons: a step forward on the role of SNORD116 microdeletion in the pathophysiology of addictive behavior in Prader-Willi syndrome. Mol Psychiatry 10.1038/s41380-024-02542-4

  • Lanoizelet M, Michel L, Lagadec R, Mayeur H, Guichard L, Logeux V, Séverac D, Martin K, Klopp C, Marcellini S, Castillo H, Pollet N, Candal E, Debiais-Thibaud M, Boisvert C, Billoud B, Schubert M, Blader P, Mazan S. (2024) Analysis of a shark reveals ancient, Wnt-dependent, habenular asymmetries in vertebrates. Nat Commun. 10.1038/s41467-024-54042-2

  • Perrier C, Allio R, Legeai F, Gautier M, Bénéluz F, Marande W, Theron A, Rodde N, Herrera M, Saune L, Parrinello H, Mcclure M, Arias M. (2024) Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America. J Hered. 10.1093/jhered/esae069

  • Argirò L, Laffont C, Moreau C, Moreau C, Su Y, Pervent M, Parrinello H, Blein T, Kohlen W, Lepetit M, Frugier F. (2024) The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants. J Exp Bot 10.1093/jxb/erae281

  • Gautier M, Micol T, Camus L, Moazami-Goudarzi K, Naves M, Guéret E, Engelen S, Lemainque A, Colas F, Flori L, Druet T. (2024) Genomic Reconstruction of the Successful Establishment of a Feralized Bovine Population on the Subantarctic Island of Amsterdam. Mol Biol Evol. 10.1093/molbev/msae121

  • Ramírez Martínez J, Guillou S, Le Prieur S, Di Vittorio P, Bonal F, Taliadoros D, Gueret E, Fournier E, Stukenbrock EH, Valade R, Gladieux P. (2024) Deep population structure linked to host vernalization requirement in the barley net blotch fungal pathogen. Microb Genom. 10.1099/mgen.0.001241

  • Kuhl H, Euclide PT, Klopp C, Cabau C, Zahm M, Lopez-Roques C, Iampietro C, Kuchly C, Donnadieu C, Feron R, Parrinello H, Poncet C, Jaffrelo L, Confolent C, Wen M, Herpin A, Jouanno E, Bestin A, Haffray P, Morvezen R, de Almeida TR, Lecocq T, Schaerlinger B, Chardard D, Żarski D, Larson WA, Postlethwait JH, Timirkhanov S, Kloas W, Wuertz S, Stöck M, Guiguen Y. (2024) Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae. BMC Biol. 10.1186/s12915-024-01935-9

  • Doublet M, Degalez F, Lagarrigue S, Lagoutte L, Gueret E, Allais S, Lecerf F. (2024) Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in Layers. PLoS One 10.1371/journal.pone.0298565

  • Toustou C, Boulogne I, Gonzalez AA, Bardor M. (2024) Comparative RNA-Seq of Ten Phaeodactylum tricornutum Accessions: Unravelling Criteria for Robust Strain Selection from a Bioproduction Point of View. Mar Drugs. Mar Drugs. 10.3390/md22080353

  • Leiba J, Sipka T, Begon-Pescia C, Bernardello M, Tairi S, Bossi L, Gonzalez AA, Mialhe X, Gualda EJ, Loza-Alvarez P, Blanc-Potard A, Lutfalla G, Nguyen-Chi ME. (2024) Dynamics of macrophage polarization support Salmonella persistence in a whole living organism. Elife 10.7554/eLife.89828

  • Darojat Muhamad Rizqi, Kusdiana Alchemi Putri Juliantika, Montoro Pascal, Lopez David, Oktavia Fetrina, Ismawanto Sigit, Sudarsono Sudarsono (2024) Bioassays and field observations revealed complex and different genetic bases in Pestalotiopsis and circular leaf fall disease in Hevea brasiliensis. Industrial Crops and Products 10.1016/j.indcrop.2024.119829

  • Dossa Komivi, Houngbo Mahugnon Ezekiel, Lechaudel Mathieu, Maledon Erick, Bovys Zoclanclounon Yedomon Ange, Irep Jean-Luc, Nazir Mian Faisal, Chair Hanâ, Cornet Denis (2024) Detecting the genetic variants associated with key culinary traits in Dioscorea alata Food Science and Technology 10.1016/j.lwt.2024.116301

  • Nelly Fioroni, Maria Del Carmen Ponce de León Rodríguez, Nicolas Leconte, Claire Mouquet-Rivier, Caroline Guzman, Frédéric Boudard, Claudie Dhuique-Mayer, Myriam Collin, Anaïs Deglos, Emmanuelle Reboul, Ángela Bravo-Núñez, Caroline Laurent-Babot (2024) Development of an in vitro triculture model of intestine inflammation to assess the immunomodulatory properties of cassava and roselle, two African green leafy vegetables NFS Journal 10.1016/j.nfs.2025.100213

  • Julie Sanceau, Lucie Poupel, Camille Joubel, Isabelle Lagoutte, Stefano Caruso, Sandra Pinto, Christèle Desbois-Mouthon, Cécile Godard, Akila Hamimi, Enzo Montmory, Cécile Dulary, Sophie Chantalat, Amélie Roehrig, Kevin Muret, Benjamin Saint-Pierre, Jean-François Deleuze, Sophie Mouillet-Richard, Thierry Forné , Christophe F Grosset, Jessica Zucman-Rossi, Sabine Colnot, Angélique Gougelet (2024) DLK1/DIO3 locus upregulation by a β-catenin-dependent enhancer drives cell proliferation and liver tumorigenesis Mol Ther. 10.1016/j.ymthe.2024.01.036

  • Ursic-Bedoya J., Desandré G., Chavey C., Marie P., Polizzi A., Rivière B., Guillou H., Assenat E., Hibner U., Gregoire D. (2024) FGF19 and its analog Aldafermin cooperate with MYC to induce aggressive hepatocarcinogenesis EMBO molecular medicine 10.1038/s44321-023-00021-x

  • Garin Vincent, Diallo Chiaka, Tekete Mohamed Lamine, Thera Mamoutou Korotimi, Guitton Baptiste, Dagno Karim, Diallo Abdoulaye, Kouressy Mamoutou, Leiser Willmar L., Rattunde Fred, Sissoko Ibrahima, Touré Aboubacar, Nébié Baloua, Samaké Moussa, Kholova Jana, Frouin Julien, Pot David, Vaksmann Michel, Weltzien Eva, Témé Niaba, Rami Jean-François (2024) Characterization of adaptation mechanisms in sorghum using a multireference back-cross nested association mapping design and envirotyping. Genetics 10.1093/genetics/iyae003

  • Sabina Farhadova, Amani Ghousein, François Charon, Caroline Surcis, Melisa Gomez-Velazques, Clara Roidor, Flavio Di Michele, Maud Borensztein, Albertina De Sario, Cyril Esnault, Daan Noordermeer, Benoit Moindrot, Robert Feil (2024) The long non-coding RNA Meg3 mediates imprinted gene expression during stem cell differentiation Nucleic Acids Res. 10.1093/nar/gkae247

  • Vitrac Marotea, Teai Taivini, Shili-Touzi Ines, Butaud Jean-François, Goebel François-Régis, Hervouet Catherine, D'Hont Angélique (2024) Ethnobotanic and genetic diversity of sugarcane in French Polynesia. Ethnobotany Research and Applications 10.32859/era.29.8.1-15

  • Larue Florian, Rouan Lauriane, Pot David, Rami Jean-François, Luquet Delphine, Beurier Grégory (2024) Linking genetic markers and crop model parameters using neural networks to enhance genomic prediction of integrative traits Frontiers in Plant Science 10.3389/fpls.2024.1393965

  • Bonnin Marie, Soriano Alexandre, Favreau Bénédicte, Lourkisti Radia, Miranda Maëva, Ollitrault Patrick, Oustric Julie, Berti Liliane, Santini Jérémie, Morillon Raphaël (2024) Comparative transcriptomic analyses of diploid and tetraploid citrus reveal how ploidy level influences salt stress tolerance. Frontiers in Plant Science 10.3389/fpls.2024.1469115

  • Gaspari L, Haouzi D, Gennetier A, Granes G, Soler A, Sultan C, Paris F, Hamamah s. (2024) Transgenerational Transmission of 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) Effects in Human Granulosa Cells: The Role of MicroRNAs International Journal of Molecular Sciences 10.3390/ijms25021144

  • Bohaud C, De La Cruz J, Terraza C, Barthelaix A, Laplace-Builhé B, Jorgensen C, Arribat Y, Djouad F (2024) Lactate metabolism coordinates macrophage response and regeneration in zebrafish Theranostics 10.7150/thno.65235

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