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Publications 2020

  • Charbonnel N, Galan M, Tatard C, Loiseau A, Diagne C, Dalecky A, Parrinello H, Rialle S, Severac D, Brouat C (2020) Differential immune gene expression associated with contemporary range expansion in two invasive rodents in Senegal. Sci Rep. 10:18257. doi: 10.1038/s41598-020-75060-2
  • Djerrab D, Bertrand B, Breitler JC, Léran S, Dechamp E, Campa C, Barrachina C, Conejero G, Etienne H, Sulpice R (2020) Photoperiod dependent transcriptional modifications in key metabolic pathways in Coffea arabica. Tree Physiol. tpaa130 doi: 10.1093/treephys/tpaa130
  • Broseus L, Thomas A, Oldfield AJ, Severac D, Dubois E, Ritchie W (2020) TALC: Transcript-level Aware Long-read Correction. Bioinformatics. 36:5000-6 doi: 10.1093/bioinformatics/btaa634.
  • Wen M, Feron R, Pan Q, Guguin J, Jouanno E, Herpin A, Klopp C, Cabau C, Zahm M, Parrinello H, Journot L, Burgess SM, Omori Y, Postlethwait JH, Schartl M, Guiguen Y (2020) Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). BMC Genomics. 21:552. doi: 10.1186/s12864-020-06959-3.
  • Koua D, Mary R, Ebou A, Barrachina C, El Koulali K, Cazals G, Charnet P, Dutertre S (2020) Proteotranscriptomic Insights into the Venom Composition of the Wolf Spider Lycosa tarantula. Toxins (Basel). 12:501. doi: 10.3390/toxins12080501.
  • Licciardi S, Loire E, Cardinale E, Gislard M, Dubois E, Cêtre-Sossah C (2020) In vitro shared transcriptomic responses of Aedes aegypti to arboviral infections: example of dengue and Rift Valley fever viruses. Parasit Vectors. 13:395. doi: 10.1186/s13071-020-04253-5.
  • Mohamed M, Dang NT, Ogyama Y, Burlet N, Mugat B, Boulesteix M, Mérel V, Veber P, Salces-Ortiz J, Severac D, Pélisson A, Vieira C, Sabot F, Fablet M, Chambeyron S (2020) A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore. Cells. 9:E1776. doi: 10.3390/cells9081776.
  • North HL, Caminade P, Severac D, Belkhir K, Smadja CM (2020) The role of copy-number variation in the reinforcement of sexual isolation between the two European subspecies of the house mouse. Philos Trans R Soc Lond B Biol Sci. 375:20190540. doi: 10.1098/rstb.2019.0540.
  • Paris M, Boyer R, Jaenichen R, Wolf J, Karageorgi M, Green J, Cagnon M, Parinello H, Estoup A, Gautier M, Gompel N, Prud'homme B (2020) Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing. Sci Rep. 10:11227. doi: 10.1038/s41598-020-67373-z.
  • Guérin A, Martire D, Trenquier E, Lesluyes T, Sagnol S, Pratlong M, Lefebvre E, Chibon F, de Santa Barbara P, Faure S (2020) LIX1 regulates YAP activity and controls gastrointestinal cancer cell plasticity. J Cell Mol Med. 24:9244-9254. doi: 10.1111/jcmm.15569.
  • Kottler VA, Feron R, Nanda I, Klopp C, Du K, Kneitz S, Helmprobst F, Lamatsch DK, Lopez-Roques C, Lluch J, Journot L, Parrinello H, Guiguen Y, Schartl M (2020) Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species. Genetics. 214:193-209. doi: 10.1534/genetics.119.302698.
  • Lambert I, Pervent M, Le Queré A, Clément G, Tauzin M, Severac D, Benezech C, Tillard P, Martin-Magniette ML, Colella S, Lepetit M (2020) Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling. J Exp Bot. 71:5039-5052. doi: 10.1093/jxb/eraa221.
  • Kauzlaric A, Jang SM, Morchikh M, Cassano M, Planet E, Benkirane M, Trono D (2020) KAP1 targets actively transcribed genomic loci to exert pleomorphic effects on RNA polymerase II activity. Philos Trans R Soc Lond B Biol Sci. 375:20190334. doi: 10.1098/rstb.2019.0334.
  • Puighermanal E, Castell L, Esteve-Codina A, Melser S, Kaganovsky K, Zussy C, Boubaker-Vitre J, Gut M, Rialle S, Kellendonk C, Sanz E, Quintana A, Marsicano G, Martin M, Rubinstein M, Girault JA, Ding JB, Valjent E (2020) Functional and molecular heterogeneity of D2R neurons along dorsal ventral axis in the striatum. Nat Commun. 11:1957. doi: 10.1038/s41467-020-15716-9.
  • Du K, Stöck M, Kneitz S, Klopp C, Woltering JM, Adolfi MC, Feron R, Prokopov D, Makunin A, Kichigin I, Schmidt C, Fischer P, Kuhl H, Wuertz S, Gessner J, Kloas W, Cabau C, Iampietro C, Parrinello H, Tomlinson C, Journot L, Postlethwait JH, Braasch I, Trifonov V, Warren WC, Meyer A, Guiguen Y, Schartl M (2020) The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nat Ecol Evol. 4:841-52 doi: 10.1038/s41559-020-1166-x.
  • Olazcuaga L, Loiseau A, Parrinello H, Paris M, Fraimout A, Guedot C, Diepenbrock LM, Kenis M, Zhang J, Chen X, Borowiec N, Facon B, Vogt H, Price DK, Vogel H, Prud'homme B, Estoup A, Gautier M (2020) A whole-genome scan for association with invasion success in the fruit fly Drosophila suzukii using contrasts of allele frequencies corrected for population structure. Mol Biol Evol. 37:2369-2385. doi: 10.1093/molbev/msaa098.
  • Lafont M, Vergnes A, Vidal-Dupiol J, de Lorgeril J, Gueguen Y, Haffner P, Petton B, Chaparro C, Barrachina C, Destoumieux-Garzon D, Mitta G, Gourbal B, Montagnani C (2020) A Sustained Immune Response Supports Long-Term Antiviral Immune Priming in the Pacific Oyster, Crassostrea gigas. mBio. 11. pii: e02777-19. doi: 10.1128/mBio.02777-19.
  • Saksouk N, Hajdari S, Perez Y, Pratlong M, Barrachina C, Graber C, Grégoire D, Zavoriti A, Sarrazin A, Pirot N, Noël JY, Khellaf L, Fabbrizio E, Julien E, Cammas FM (2020) The mouse HP1 proteins are essential for preventing liver tumorigenesis. Oncogene. doi: 10.1038/s41388-020-1177-8.
  • de Toledo M, Lopez-Mejia IC, Cavelier P, Pratlong M, Barrachina C, Gromada X, Annicotte JS, Tazi J, Chavey C (2020) Lamin C Counteracts Glucose Intolerance in Aging, Obesity and Diabetes Through β-Cell Adaptation. Diabetes. pii: db190377. doi: 10.2337/db19-0377.
  • Lobo IKC, do Nascimento ÁR, Yamagishi MEB, Guiguen Y, da Silva GF, Severac D, da Costa Amaral A, Reis VR, de Almeida FL (2020) Transcriptome of tambaqui Colossoma macropomum during gonad differentiation: Different molecular signals leading to sex identity. Genomics. 112:2478-2488. doi: 10.1016/j.ygeno.2020.01.022.
  • Takehana Y, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Donnadieu C, Barrachina C, Journot L, Kawaguchi M, Yasumasu S, Ansai S, Naruse K, Inoue K, Shinzato C, Schartl M, Guiguen Y, Herpin A (2020) Genome sequence of the euryhaline javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity. G3. 10:907-915 doi: 10.1534/g3.119.400725.
  • Reynès C, Kister G, Rohmer M, Bouschet T, Varrault A, Dubois E, Rialle S, Journot L, Sabatier R (2020) ISoLDE: a data-driven statistical method for the inference of allelic imbalance in datasets with reciprocal crosses. Bioinformatics. 36:504-513 doi: 10.1093/bioinformatics/btz564
  • Champagne J, Linares LK, Maurel B, Zampieri A, Moreno M, Fuentes I, Dubois E, Severac D, Decorsière A, Bienvenu F (2020) TAG-RNAi overcomes off-target effects in cancer models. Oncogene. 39:935-45. doi: 10.1038/s41388-019-1020-2.
  • Le Saux S, Aarrass H, Lai-Kee-Him J, Bron P, Armengaud J, Miotello G, Bertrand-Michel J, Dubois E, George S, Faklaris O, Devoisselle JM, Legrand P, Chopineau J, Morille M (2020) Post-production modifications of murine mesenchymal stem cell (mMSC) derived extracellular vesicles (EVs) and impact on their cellular interaction. Biomaterials. 231:119675. doi: 10.1016/j.biomaterials.2019.119675.
  • Stavrinides AK, Dussert S, Combes MC, Fock-Bastide I, Severac D, Minier J, Bastos-Siqueira A, Demolombe V, Hem S, Lashermes P, Joët T (2019) Seed comparative genomics in three coffee species identify desiccation tolerance mechanisms in intermediate seeds. J Exp Bot. 71:1418-33. doi: 10.1093/jxb/erz508.

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